Chipbase 2.0
WebHere, we have updated the LncRNADisease database to version 2.0 by integrating comprehensive experimentally supported and predicted ncRNA-disease associations curated from manual literatures and other resources. The new developments in LncRNADisease v2.0 include (I) over 40-fold ncRNA-disease associations enhancement … WebAn ensemble model of binary node interactions (valid for an abstract average cell) was derived from publicly available data. Transcription factor binding data was derived from ChIPBase 2.0 (Zhou et al., 2024), and …
Chipbase 2.0
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WebJan 8, 2024 · In addition, a series of databases have been developed to explore ncRNA expression patterns, regulatory networks and biological functions, such as RNAcentral , LNCipedia , LncRNAdb , ChIPBase , NONCODE , LncRNADisease , starBase and circBase . However, these databases focus on either specific ncRNA families or specific features … WebMar 29, 2024 · Decoded the regulatory mechanisms mediated by transcriptional regulators and epitranscriptomic codes and developed integrative analysis platforms (ChIPBase and dreamBase) for facilitating study of ...
WebNews: ChIPBase v2.0 has been updated to v3.0 ! Jumping to ChIPBase v3.0 page to see more function and modules. How to cite: ChIPBase v2.0: decoding transcriptional … News: ChIPBase v2.0 has been updated to v3.0 ! Jumping to ChIPBase v3.0 page … LncRNA module allows users to browse genes that could be upstream or … miRNA module allows users to browse genes that could be upstream or … OtherNcRNA module allows users to browse genes that could be upstream or … Protein module allows users to browse genes that could be upstream or … Regulator module provides users with an interface to search for the DNA-binding … Motif provides users with a platform to visulize the binding motifs of … ChIP-Function tool help users predict the functions of DNA-binding proteins by … ChIP-seq allows users to download or browse the binding sites of the DNA … WebSorted significantly differentially expressed genes in colorectal cancer cells, and compared with ChIPBase v2.0. Carcinogenicity screening: Searched SEPIA to identify significant genes.
WebstarBase v2.0: decoding Interaction Networks of lncRNAs, miRNAs, ceRNAs ... WebNov 2, 2015 · XP. 1,516. Country. Nov 2, 2015. #1. Here's a re-upload of my Chipsune! 2.0 Which is what I think is the latest version (I stopped keeping track, and my files are a …
WebSep 7, 2024 · ChIPBase constructed ‘Regulator’ module to predict hundreds of TFs and histone modifications that were involved in or affected transcription of ncRNAs and PCGs. ChIPBase built a web-based tool, Co-Expression, to recognize the co-expression patterns between DNA-binding proteins and various types of genes by integrating the gene …
WebChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other … pop up phone case holderhttp://rna.sysu.edu.cn/chipbase/ pop up phone grip holderhttp://www.rnanut.net/lncrnadisease/index.php/home/search sharon m helzermanWebmiRBase is the central online repository for microRNA (miRNA) nomenclature, sequence data, annotation and target prediction. The current release (10.0) contains 5071 miRNA loci from 58 species, expressing 5922 distinct mature miRNA sequences: a growth of over 2000 sequences in the past 2 years. miRBase provides a range of data to facilitate ... sharon m hansford green bay wisconsonWebOct 26, 2024 · Approximately 10% of c-Myc-regulated genes (download from ChIPBase v.2.0) were inhibited by rapamycin. View Large Image Figure Viewer; Download Hi-res image Download (PPT) To investigate the relationship between STAT3 and c-Myc, we used data from a STAT3 chromatin ... pop up phone holder adhesiveWebFeb 13, 2024 · Transcription factor binding data w as derived from ChIPBase 2.0 41, and information on other. known interactions w ere sourced from KEGG 42 and Reactome.org (see T able S1). Statistical analysis. sharon m fagerWebDec 16, 2024 · GEO (GSE31189, GSE87304, GSE13507, GSE31684, GSE124305), ChIPBase 2.0, and starBase 2.0 databases were used to predict the correlation between … sharon m hempel lmft